The Atlantic put Mark Bowden (for crying out loud) on Conficker and turned in a clunker. I think the problem is that a narrative journalist's instincts and pressures aren't compatible with stories like Stuxnet and Conficker.
I remember that - it was terrible. I was thinking more like Steven Levy for Wired or even Bruce Sterling. Wired have yet to do a feature on Stuxnet
or Clive Thompson for NYT Magazine - his tech writing has been excellent, particularly the Netflix prize[1] and his coverage of privacy and security issues[2]