Whether you believe they're what a university should be concerned with or not (and that's just, like, your opinion, man) the fact that they turn a profit means you can't point to them as wasteful spending or a culprit for high tuition.
They are frequently granted monopolies and students are required to pay for them whether they want to or not, which means that they aren't subject to any market forces and costs spiral out of control. Frequently there isn't even a line-item you can point to on your bill, it's just swallowed up in general tuition.