It doesn't make sense to me because a glass of water is a discrete set. If we only had two molecules you could just interchange them (with a 180 degree rotation), without any fixed points.
Show me a mathematical continuum in the real-world. And this is just the domain, nothing said about the mapping yet (the continuous function). Every analogy has its limits.
If you get to assume continuous paper, then I get assumed continuous paper.
If you don't want to assume continuity, then you get it back by rephrasing your theorems as "within a margin of error equal to the distance between discrete objects".
I'd guess the example of the glass of water was made as an afterthought, or as a vivid example of the potential complexity of the theorem. As your example shows, it simply cannot be true. If you think of a vase with marbles, it is also clear. Or if you think of an (ideal) gas in a closed system: would there be at least one particle that always(!) stays in the same place?