There's a bunch of stuff to choose from, but I'll just pick one at random. He said: "we are all equal". Though we all should be treated equally under the law, and we all deserve equal protections for certain things, as a point of fact, we are not all equal.
Just reread Cook's speech with an eye towards what statements there is not a 99+% consensus on. Those are the political statements. I'm an Apple developer, shareholder, and end-user, and I don't want Cook making political statements.