Would like to convey some belated but serious gratitude for this. When I was working on some heavy-duty LaTeX academic publishing a year or so ago, this was one of the few available resources for full source code of a serious, professional-looking, non-math document. I find it incredibly helpful and inspiring.
As a side note, I am always amazed at the playful-but-ugly aesthetics that are common in the TeX community. While talking about having a professional-level typesetting engine, TeX-related publications are frequently painfully ugly. It somewhat undermines the cause.
Did you print this in color? Did you actually have graphics and screen shots in the paper?
Academy changed (improved?) since I last read academic papers.