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Are there undocumented flags that you're running this with? I wind up with a series of graphs too densely packed to make sense of when I run it on angular.

The PDFs that come out of igraph layout are not that pretty. The screenshots I used on the blog post are generated with Cytoscape 3.1.1, which gives better layout and better styling options. For Angular.js, I went with "partialCorrelations_0.3.sif".

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