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Me and my gf went through a range of note-taking apps to find one that she could use for organising her business TODO's and notes. She did try Evernote, but the feeling was always "what do I do with all this". She ended up using the much more barebones http://zim-wiki.org/

It's quite simple to use if all you want is to make hierarchical TODO lists that you can check off, but also lets you link between pages, do some minor formatting etc.

Also, points for storing files as plain text and having very friendly git integration (just click File‚ÜíSave a version, you never see any scary merge stuff since what you can do from the UI is so restricted).

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