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The thing about commuting by bike/transit in the Bay Area is that it is doable, largely because there is critical mass with regards to enough people doing it that the facilities exist. In many cities, you cannot bring a bike onto a rush hour train. Here? 2 bike cars per train, packed to capacity. This summer, I was commuting from SF to Stanford. 10-minute bike ride on one end, 5-minute bike ride on the other end, 37 minute train ride in the middle. Got plenty of reading/homework done and a bit of exercise.

Have to disagree here. The limited mass transit system that exists in the South Bay is ridiculously slow.

He's talking about Caltrain. If you can do pure Caltrain + cycle it will be faster than driving during rush hour, often significantly so, except on the one day a month that someone is killed, on those days you're fucked but at least you have a good excuse.

Compared to what?

Any vehicle. Even when going from station to station, VTA light rail is often less than a third the speed of driving. Biking is often faster.

Coverage is also really poor, especially in the southern areas (Cupertino, Campbell, etc.)

(Just to clarify: Biking in the Bay Area is really good. Public transit, at least in the South Bay, not so much.)

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