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Tangentially related: for my own small projects I use Artemis for bug/issue tracking (my reasoning is at http://chriswarbo.net/blog/2017-06-14-artemis.html ).

It uses maildir files in a hidden directory, which can be tracked like any other files; e.g. when committing a bug fix we can also commit the closing of the associated issue. I've also configured Emacs to make using it even smoother (opening issues/comments in a derivative of message-mode for syntax highlighting, with a C-c C-c binding to save and stage; I've partially finished a derivative of tabulated-list-mode for browsing issues interactively).

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