Pubmed publishes its dataset for download. Its rather large but update files come frequently. Its amazing. I beleive NIH adds the MESH terms.
ftp://ftp.ncbi.nlm.nih.gov/pubmed/
We had someone do a project with it. downloaded the dataset and used it and create a tool to do some searches that we found useful to find colaborators: (last author, working on a specific gene, paper counts, most recent).
Searching by Mesh Terms across species, and search with orthologs.
The dataset sometimes has a hard time disambiguating names (I think the european dataset assigns Ids to names)
ftp://ftp.ncbi.nlm.nih.gov/pubmed/
We had someone do a project with it. downloaded the dataset and used it and create a tool to do some searches that we found useful to find colaborators: (last author, working on a specific gene, paper counts, most recent).
Searching by Mesh Terms across species, and search with orthologs.
The dataset sometimes has a hard time disambiguating names (I think the european dataset assigns Ids to names)