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Sorry to be pedantic - but I didn't think that 'pandoc' was an actual document format purely a tool for converting between formats. Do you mean that you do your writing in kind of a 'pandoc flavoured' markdown? [0]

[0]: https://pandoc.org/MANUAL.html#pandocs-markdown

Well, between Pandoc's markdown flavor and how it has its own way of letting you insert latex code anywhere, you're not going to be able to process your document using anything that's not trying to be compatible with pandoc documents.

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