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ADAM: Genomics on Spark, Avocado Germline Variant Caller, and DECA CNV Caller (bdgenomics.org)
27 points by heuermh on Jan 10, 2018 | hide | past | web | favorite | 3 comments



I'm curious how these pipelines fared on the NIST PrecisionFDA challenge.


Do you have a link? We have not participated in such a challenge.


PrecisionFDA Consistency Challenge https://precision.fda.gov/challenges/consistency

PrecisionFDA Truth Challenge https://precision.fda.gov/challenges/truth/results

The challenges themselves are closed, but perhaps we can ask for access to the challenge data and evaluation criteria to produce unofficial responses.




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