I strongly prefer Patterson and Hennessy Computer Organization and Design to their Computer Architecture which I really don't like; if I do look something up in CA, it's in an old edition. The Dragon Book 2nd ed is awesome. We didn't have a book for 61B. I didn't like the OS book whatever it was. Norvig + Russell is pretty darned good. The notes for CS 70 are awesome as are the CS 161 notes.
If Kubi is teaching just take the course.